A space launch turns into a fight for survival for Mark, Blue, and R.J. when Red Rot, an international fugitive, hijacks America's newest space shuttle.
Thoroughly Describes Biological Applications, Computational Problems, and Various Algorithmic Solutions Developed from the author's own teaching material, Algorithms in Bioinformatics: A Practical Introduction provides an in-depth ...
An overview of image mining methods is performed by Hsu, Lee, and Zhang [HLZ02]. Text data analysis has been studied extensively in information retrieval, with many good textbooks and survey articles, such as Salton and McGill [SM83], ...
Perform Sequence Alignments of All Possible Pairs of Chromosomes Using MegaBLAST The MegaBLAST program is used to perform sequence alignments because it was designed to identify long alignments efficiently between similar sequences.
Cabili, M.N., Trapnell, C., Goff, L. et al. 2011. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes and Development 25(18), 1915–1927. PMID: 21890647.
Falquet L , Pagni M , Bucher P , Hulo N , Sigrist CJA , Hofmann K , Bairoch A. 2002 . The PROSITE database , its status in 2002. ... Higgins , D. , J. Thompson , T. Gibson , J. D. Thompson , D. G. Higgins , T. J. Gibson . 1994.
Tabular output format for a MegaBLAST search. The query sequence has the identifier 'mysequence'; the database sequence is 'U12859.1'. An alignment between the two of 43 bases at 100% identity is reported. Fields are separated by tabs ...
This is the only book completely devoted to the popular BLAST (Basic Local Alignment Search Tool), and one that every biologist with an interest in sequence analysis should learn from.
0 0.2 0.4 0.6 0.8 1 1.2 BLAT-m1 BLAT-m2 MegaBLAST SSAHA mpscan 20 30 40 50 60 70 80 90 100 Tag length Fig. 5. Sensitivity of MegaBlast, BLAT, and SSAHA compared to mpscan as the percentage of found matches after filtering.
2000) allows MegaBLAST to handle longer nucleotide sequences approximately 10 times faster than BLASTN would. MegaBLAST is particularly well suited to finding whether a sequence is part of a larger contig, detecting potential sequencing ...
1.76 Program selection MEGABLAST is the Tool to Identify Identical Nucleotide Sequence. Though programs like MEGABLAST, discontiguous megablast, and blastn can identify an unknown sequence by checking if that sequence already exists in ...